Common Customs Clearance Delays in Australia

By Mrinal kanty   |

January 26, 2026

5 mins read
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A single wrong digit in a tariff code, a missing fumigation certificate or an untreated timber pallet can leave your cargo sitting at the wharf while storage charges build up. If you have just received a "Held by Customs" notice, you are not alone. Understanding the common customs clearance delays in Australia is the best starting point for fixing a hold and stopping the next one.

Every import is checked by the Australian Border Force (ABF) and the Department of Agriculture, Fisheries and Forestry (DAFF), and Australia's border and biosecurity rules leave very little room for error. Whether you are a first-time importer bringing in a small parcel or a logistics manager handling FCL and LCL shipments, a customs hold costs you time, money and customer trust.

This guide explains why holds happen, what affects how long they last, and the practical steps you can take to get your goods moving again.

What Does Customs Clearance Actually Mean for You?

Customs clearance is the mandatory process in which the Australian Government checks that your imported goods are safe, legal and correctly declared, and that any duty and taxes have been paid. For a full walk-through of each stage, see our customs clearance step-by-step guide.

In practice, clearance is a digital exchange between your licensed customs broker and two main government bodies:

  1. The Australian Border Force (ABF): focuses on border security, prohibited and restricted goods, and collecting customs duty and GST.
  2. The Department of Agriculture, Fisheries and Forestry (DAFF): focuses on biosecurity, keeping pests such as the brown marmorated stink bug (BMSB) and plant and animal diseases out of Australia.

If either agency spots a red flag, your shipment is placed on hold and becomes stuck in customs until the issue is resolved. Meanwhile, port storage and container charges may keep accruing.

Common Customs Clearance Delays in Australia: 7 Customs Hold Reasons

If your tracking status shows a customs hold, it is usually caused by one of the following seven issues.

1. Incomplete or Incorrect Documentation

Paperwork problems are the most common cause of customs clearance delays in Australia. If your documents do not match the physical cargo, or key details are missing, the ABF can hold the consignment until the discrepancy is fixed. Our article on document errors that cause customs delays covers this in more depth.

  • Commercial invoice: should clearly show the seller, buyer, a full description of the goods, quantities, values, currency and the Incoterms used, in English or with a translation.
  • Packing list: must match the invoice and the cargo exactly, including package counts and weights.
  • Tariff (HS) classification: the Harmonized System code determines the duty that applies. Guessing the code can lead to amended entries, delays and possible penalties. Our customs tariff and product classification guide explains how classification works.

Pro tip: Ask your supplier to send you the commercial invoice and packing list before the goods leave the country of origin, and have your customs broker or freight forwarder check them while there is still time to fix errors.

2. Biosecurity Hazards and Biosecurity Import Delays

Australia is an island nation with a unique environment, so biosecurity import delays are very common, particularly for sea freight. DAFF officers look closely for:

  • Soil and organic matter: often found on used machinery, vehicles and tyres.
  • BMSB risk: under DAFF's BMSB seasonal measures, targeted goods manufactured in or shipped from target risk countries that are shipped between 1 September and 30 April (inclusive) generally need approved treatment, and vessels can also be subject to measures. Check the current list of target risk countries and goods on the DAFF BMSB seasonal measures page before you ship.
  • Timber and wood packaging: pallets, crates and dunnage must be treated and marked in line with the international standard ISPM 15.

If DAFF suspects a pest or contamination, the container may be directed to an approved facility for unpacking, inspection, cleaning or treatment. This is one of the more serious types of delay because it depends on facility availability, the treatment required and how quickly any non-compliance can be fixed. You can check the import conditions for your product on the Biosecurity Import Conditions system (BICON).

3. Unpaid Customs Duty and GST

Your goods will not be released until duty, GST and any other taxes owed have been paid.

  • GST: under the ABF's GST rules for imports, GST on taxable importations is 10% of the value of the taxable importation (VoTI). Confirm the current rate and how it applies to your goods with your customs broker.
  • Customs duty: the duty rate depends on the tariff classification of your goods and their country of origin. A Free Trade Agreement (FTA) may reduce or remove duty if the goods meet the agreement's rules of origin.

If funds are not ready, or there is a dispute about the value of the goods, the cargo stays at the wharf or depot. Delays caused by payment issues are almost always avoidable with a little planning.

4. Valuation Issues

Under-declaring the value of your goods to reduce duty and GST is a serious offence, and the ABF has good information about typical market values. If you declare high-value electronics at a small fraction of their retail price, expect a customs hold. The ABF may ask for proof of the transaction, such as bank transfer records, purchase orders and correspondence with the supplier.

5. Prohibited and Restricted Goods

Some goods are banned outright, such as asbestos-containing products and certain weapons, while others need a permit, such as some medicines, certain lasers and tobacco products. The ABF lists them on its prohibited goods page.

  • Common trap: importing "health supplements" that contain ingredients treated as prescription-only in Australia.
  • Result: the goods may be seized, or you may need to apply for a permit after arrival, which can significantly extend the hold. Learn more in our guide on what happens when customs seizes a shipment.

6. Congestion and Peak Seasons

Sometimes the issue is not your paperwork; it is the volume of cargo moving through the system. Clearance and inspection delays tend to increase during busy periods such as:

  • The lead-up to Christmas: retail and gift volumes rise sharply.
  • Black Friday and Cyber Monday: e-commerce volumes surge.
  • Lunar New Year: exporters rush to ship before factories in China and other Asian countries close for the holiday.

During these periods, terminals, depots, inspection facilities and carriers handle far more LCL and FCL shipments, so queues for unpacking, inspection and collection can grow.

7. Random Compliance Checks

Even if everything is correct, your shipment may be selected for a random check. This is part of the ABF's compliance and risk-targeting activity, and being selected does not mean you have done anything wrong. Our guide to the customs inspection process in Australia explains what happens next.

Import Focus: Importing Building Materials from China to Australia

The construction sector accounts for many customs holds. If you are importing building materials from China to Australia, expect close scrutiny.

Why Building Materials Get Stuck

  • Asbestos: importing goods that contain asbestos is prohibited in Australia. Products labelled "asbestos-free" overseas can still contain asbestos, so building panels, gaskets, tiles and similar products may be targeted for testing. If testing is required, the goods are held while it is completed, and the importer generally bears the related costs.
  • Timber treatment: plywood, timber products and wooden packaging must meet DAFF import conditions. If your supplier uses untreated timber pallets, the whole shipment can become a biosecurity risk.
  • Standards and certification: some building products, such as certain steel and glass items, may need evidence that they meet Australian Standards or other regulatory requirements. Missing certificates can slow down clearance or later approvals.

Pro tip: Work with a freight forwarder and customs broker who understand the rules for construction materials, and ask your supplier for test reports and certificates before you pay for the goods.

Common Errors and Their Consequences

The table below shows how serious different problems can be. The actual delay depends on the port, the agency involved, inspection facility availability and how quickly you can supply what is needed.

Common error Customs hold consequence Delay severity and main drivers
Missing commercial invoice Customs cannot assess value or tax, so the entry stops. Usually minor if the invoice is supplied promptly.
Wrong tariff (HS) code The entry must be amended. A penalty for an incorrect declaration is possible. Minor to moderate, depending on how quickly the correct code is confirmed.
Missing BMSB treatment certificate Goods directed for onshore treatment, or export. Serious; depends on treatment facility availability and whether onshore treatment is permitted.
Soil or dirt on machinery Cleaning required at an approved facility. Moderate to serious; depends on how contaminated the goods are and facility bookings.
Random X-ray or physical inspection Container moved to an examination facility. Moderate; depends on inspection queues and the type of examination.
Unpaid GST or duty Goods held until payment is received. Continues until the amount owed is paid.

Location Spotlight: Sydney, Melbourne, Brisbane and Perth

Customs and biosecurity rules are national, but local conditions at each port and airport can affect how quickly your cargo moves.

Sydney (Port Botany and Sydney Airport)

Sydney is one of Australia's busiest gateways for both air and sea cargo.

  • Volume: high volumes can mean longer queues for X-ray and physical inspections during busy periods.
  • Biosecurity: a large share of timber, plant-based products and machinery arrives through Sydney, so biosecurity checks are an important factor.

Our team handles customs and quarantine clearance in Sydney.

Melbourne (Port of Melbourne and Melbourne Airport)

Melbourne receives a large volume of retail and consumer goods. Delays can be linked to weather, congestion and industrial action affecting terminals or carriers, which can create backlogs at depots and examination facilities. See our customs and quarantine clearance in Melbourne service.

Brisbane and Perth

In Brisbane, agricultural and food imports often attract extra biosecurity attention. In Perth and Fremantle, distance from the east coast and the location of specialist facilities can affect how quickly inspections, treatments or disputes are resolved. Learn more about customs clearance in Brisbane and customs clearance in Fremantle.

How Long Does Customs Clearance Take?

A common question is "how long does customs clearance take?" The honest answer is that there is no fixed timeframe. Clearance time depends on the transport mode, the quality of your documents, whether biosecurity or border checks are required, the port or airport, and how quickly duty and GST are paid.

Standard Clearance (No Issues)

  • Air freight: often clears relatively quickly when documents are complete and lodged in advance.
  • Sea freight: straightforward entries can clear without much delay, especially when they are lodged before the vessel arrives.
  • Parcel post and courier: timing varies with the carrier, the volume of parcels being processed and the value of the goods.

Delayed Clearance (With Issues)

  • Document query: usually the quickest type of hold to resolve, provided you respond promptly with accurate information.
  • Biosecurity inspection: often the longest, because inspection or treatment must be booked with an approved facility and the goods may need to be moved.
  • Border Force X-ray or examination: depends on examination facility queues and whether a full unpack is needed.

Keep in mind: clearance does not include the time the airline, shipping line, terminal or depot needs to unload, unpack and release the cargo. "Cleared" does not always mean "ready for pickup". For more on hold durations, read how long customs can hold a package.

For a shipment-specific estimate, contact our team with your cargo details.

How to Avoid Customs Clearance Delays in Australia

The best way to deal with a customs hold is to prevent it. Use this checklist for a smoother import. Our guide on how to speed up customs clearance in Australia adds more practical tips.

1. Lodge Your Import Declaration Early

Do not wait until the ship berths or the flight lands. Your customs broker can usually lodge the import declaration before the goods arrive, so assessment can start while the cargo is still in transit. If the ABF or DAFF raises a query, you have a chance to answer it before the goods reach the wharf or airport.

2. Check Your Supplier's Paperwork

Before the goods leave the factory, ask your supplier to email the invoice and packing list. Check that:

  • the values are correct and match what you actually paid;
  • the currency is stated (for example, USD or AUD);
  • the Incoterm (for example, FOB or EXW) is shown;
  • the goods are described in plain English, not just by model number.

3. Use a Licensed Customs Broker

Choose your broker on expertise, not just on the lowest price. A licensed customs broker lodges entries through the Integrated Cargo System (ICS), communicates with the ABF and DAFF on your behalf and knows how to resolve queries correctly. Read what a customs broker does to understand their role.

4. Plan Around Peak and Seasonal Risks

  • Christmas and major sales events: book and ship earlier to allow for congestion.
  • BMSB season: make sure required treatment is done by an approved provider before shipping, and that the certificate travels with your documents.
  • Lunar New Year: expect import delays from factory shutdowns and the rush of cargo before and after the holiday.

What Happens When Your Shipment Is Stuck in Customs?

If your tracking shows "Held", "Exception" or "Awaiting clearance", do not panic. Follow these steps:

  1. Contact your broker or freight forwarder: they can see the specific status and any messages from the ABF or DAFF in the customs system.
  2. Provide missing information: if a document is missing, send it straight away.
  3. Pay duty and taxes: if it is a payment hold, arrange payment promptly.
  4. Allow for inspection: if a physical inspection is required, the timing depends on facility availability. Your broker can help make sure the goods are ready and any documents the inspector needs are available.

Frequently Asked Questions About Customs Clearance Delays

Why is my shipment delayed at customs?

The most likely reasons are incomplete or inconsistent paperwork, such as a missing invoice or vague description, or unpaid duty and GST. Biosecurity concerns, including BMSB treatment requirements and contaminated packaging, are also a major cause of customs holds in Australia.

How long can customs hold my package?

Customs and biosecurity officers can hold goods for as long as they need to confirm compliance. Routine document or payment holds are usually resolved once the missing information or payment is provided. Holds involving treatment, testing, permits or seizure for legal reasons generally take considerably longer.

How do I track a package stuck in customs?

You cannot track a shipment on a government website. Use the tracking number from your courier or postal carrier, or contact your freight forwarder or customs broker, who can see the status of your entry in the Integrated Cargo System (ICS).

Why would Australian customs hold a package?

Common customs hold reasons include:

  • suspected prohibited or restricted items, such as drugs or weapons;
  • undervalued goods;
  • biosecurity risks, such as seeds, timber or food;
  • a random compliance check.

How can I speed up customs clearance in Australia?

The most effective step is to lodge your import declaration early, before the goods arrive, with accurate and complete documents. Once a hold is in place, respond to every request quickly and fully. There is no shortcut around a required inspection or treatment.

What causes customs clearance delays for oversize freight?

Oversize freight, such as machinery and vehicles, often needs special biosecurity inspection to check for soil in tyres or pests in hard-to-reach areas. These inspections need specialised bookings and handling, so they can take longer to arrange than inspections for standard cartons.

Does a customs hold mean I have done something wrong?

Not necessarily. Some shipments are selected at random or because the type of goods or origin is considered higher risk. If your documents are accurate and your goods comply, a random check usually ends with the goods being released.

The Real Cost of Customs Delays

Customs clearance problems cost more than time:

  • Storage charges: terminals, depots and warehouses charge for cargo that stays beyond the free storage period.
  • Demurrage: shipping lines may charge if a full container stays at the terminal beyond the free time allowed.
  • Detention: shipping lines may charge if you keep their container outside the terminal beyond the agreed free time.
  • Lost sales: empty shelves and late orders can cost you customers.

These charges vary by port, carrier, container type and how long the cargo is held. Don't let a missing document or a biosecurity oversight hurt your business. Import rules are complex, but they are manageable with the right partner.

Talk to Omega Cargo About Your Customs Clearance

Whether you are importing building materials from China or fashion from Europe, our customs and quarantine clearance team can help you prepare your documents, lodge your entries and respond to ABF and DAFF requests.

Request a quote for your next shipment or contact Omega Cargo to discuss your import requirements.

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